Mountain West Conference
The Mountain West Conference was founded in 1999. Now including football phenomon Boise State, the conference hopes to enjoy years of success of the gridiron. Unfortunately, expansion resulted in desire for a new logo, a horrid "M W" mashup that is more appropriate for c-grade cable television.
Unfortunately, the redesign left this logo behind. A very turn of the millennium graphic, for sure, but still one that indicated geographic location and paid homage to the rough terrain member schools enjoyed. As such, one of the better conference logos in NCAA history.